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Abstract Combining with the characteristics which are developmental predominance and innovative dependence of the strategic emerging industries, basing on four-three structure innovation system, and from four dimensions of R&D innovation, transformation of innovation, product innovation, and carrier innovation to construct evaluation index system of innovation capability of strategic emerging industries. Taking the four dimensions as the influence factors of industry profitability, test results show that the influence degree of the four dimensions is unbalanced, only carrier innovation has significant impact, and synergistic effect of transformation innovation and carrier innovation is obvious. Considering disequilibrium and regional difference of innovation value chain, using equilibrium criterion and composite index to design balanced innovation ability of screening system, selecting eight provinces of Guangdong, Beijing, Jiangsu, Shanxi, Shanghai, Zhejiang, Shandong, Hubei as balanced promotion zone of innovation capacity for strategic emerging industries. Finally, it proposes policy suggestions of the R&D innovation advantage of innovation value chain spreading to the middle end.
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